NIBN Japan Microbiome Database, a database for exploring the correlations between human microbiome and health

Chen, Yi An; Kawashima, Hitoshi; Park, Jonguk et al.

Scientific Reports, 2025, 15, 19640

Number of Access:8（2025-09-29 10:03 Counts）

Identifier to cite or link to this item: https://hdl.handle.net/11094/102698

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Title
NIBN Japan Microbiome Database, a database for exploring the correlations between human microbiome and health
Creator
CreatorName
Chen, Yi An
CreatorName
Kawashima, Hitoshi
NRID
1000060803335 1000060803335
CreatorName
Park, Jonguk
CreatorName
Mohsen, Attayeb
NRID
1000000755762 1000000755762
CreatorName
Hosomi, Koji
NRID
1000040736865 1000040736865
CreatorName
Nakagata, Takashi
NRID
1000020344880 1000020344880
CreatorName
Murakami, Haruka
NRID
1000020612435 1000020612435
CreatorName
Nanri, Hinako
NRID
1000060229870 1000060229870
CreatorName
Miyachi, Motohiko
NRID
1000080376615 1000080376615
CreatorName
Kunisawa, Jun
NRID
1000050450896 1000050450896
ORCID
0000-0003-3021-7078 0000-0003-3021-7078
researchmap permalink
kenji_mizuguchi kenji_mizuguchi
Scopus Author ID
57191477452 57191477452
CreatorName
Mizuguchi, Kenji
Subject
Database
Health
Human microbiome
Nutrition
Description
Chen Y.A., Kawashima H., Park J., et al. NIBN Japan Microbiome Database, a database for exploring the correlations between human microbiome and health. Scientific Reports 15, 19640 (2025); https://doi.org/10.1038/s41598-025-04339-z.
Abstract
Recent research has highlighted the substantial impact of gut microbiome on various aspects of human health, such as obesity, inflammation, infectious diseases, and cancer. As a result, gut microbiota composition is increasingly recognized as a potential health indicator and biomarker for disease. Numerous factors, including lifestyle, diet, and physical fitness, are known to shape the composition of the human microbiome. However, a significant challenge in elucidating the relationships between these factors and the gut microbiome lies in needing a comprehensive database that integrates diverse human microbiome profiles with extensive sample metadata. To address this issue, we developed an extensive human microbiome database for healthy individuals. This initiative led to the establishment of the NIBN Japan Microbiome Database (NIBN JMD), one of the largest resources of its kind, encompassing up to 1,000 metadata points and more than 2,000 microbiome samples, including data from longitudinal studies. In this article, we describe the creation and features of NIBN JMD, detailing the data collection, processing, and database implementation. NIBN JMD is publicly accessible at https://jmd.nibn.go.jp/.
Publisher
Nature Research
Source Title
Scientific Reports
Volume (Issue)
15
Page
19640
Date of Issued
2025-06-04
Language
English
Handle URL
https://hdl.handle.net/11094/102698
eISSN
20452322
Relation.isIdenticalTo
DOI (Publisher Version)
https://doi.org/10.1038/s41598-025-04339-z
Access Rights
open access
CopyRight
This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
oaire:version
Version of Record
Category
学術雑誌論文 Journal Article