Genome structure of the legume, Lotus japonicus

Sato, Shusei; Nakamura, Yasukazu; Kaneko, Takakazu; Asamizu, Erika; Kato, Tomohiko; Nakao, Mitsuteru; Sasamoto, Shigemi; Watanabe, Akiko; Ono, Akiko; Kawashima, Kumiko; Fujishiro, Tsunakazu; Katoh, Midori; Kohara, Mitsuyo; Kishida, Yoshie; Minami, Chiharu; Nakayama, Shinobu; Nakazaki, Naomi; Shimizu, Yoshimi; Shinpo, Sayaka; Takahashi, Chika; Wada, Tsuyuko; Yamada, Manabu; Ohmido, Nobuko; Hayashi, Makoto; Fukui, Kiichi; Baba, Tomoya; Nakamichi, Tomoko; Mori, Hirotada; Tabata, Satoshi

doi:https://doi.org/10.1093/dnares/dsn008

Genome structure of the legume, Lotus japonicus

Sato, Shusei; Nakamura, Yasukazu; Kaneko, Takakazu et al.

DNA Research, 2008, 15(4), 227-239

Number of Access:2,832（2025-08-14 04:32 Counts）

Identifier to cite or link to this item: https://hdl.handle.net/11094/79044

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Title	Genome structure of the legume, Lotus japonicus
Creator	NRID 1000070370921 1000070370921 CreatorName Sato, Shusei
	NRID 1000060370920 1000060370920 CreatorName Nakamura, Yasukazu
	NRID 1000080370922 1000080370922 CreatorName Kaneko, Takakazu
	CreatorName Asamizu, Erika
	CreatorName Kato, Tomohiko
	CreatorName Nakao, Mitsuteru
	CreatorName Sasamoto, Shigemi
	CreatorName Watanabe, Akiko
	CreatorName Ono, Akiko
	CreatorName Kawashima, Kumiko
	CreatorName Fujishiro, Tsunakazu
	CreatorName Katoh, Midori
	CreatorName Kohara, Mitsuyo
	CreatorName Kishida, Yoshie
	CreatorName Minami, Chiharu
	CreatorName Nakayama, Shinobu
	CreatorName Nakazaki, Naomi
	CreatorName Shimizu, Yoshimi
	CreatorName Shinpo, Sayaka
	CreatorName Takahashi, Chika
	CreatorName Wada, Tsuyuko
	CreatorName Yamada, Manabu
	NRID 1000030343263 1000030343263 CreatorName Ohmido, Nobuko
	CreatorName Hayashi, Makoto
	NRID 1000000311770 1000000311770 researchmap permalink read0068600 read0068600 CreatorName Fukui, Kiichi
	CreatorName Baba, Tomoya
	CreatorName Nakamichi, Tomoko
	NRID 1000090182203 1000090182203 CreatorName Mori, Hirotada
	NRID 1000070197549 1000070197549 CreatorName Tabata, Satoshi
Subject	Lotus japonicus
	Genome structure
	Fabaceae
	Comparative analysis
Description	Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Tomohiko Kato, Mitsuteru Nakao, Shigemi Sasamoto, Akiko Watanabe, Akiko Ono, Kumiko Kawashima, Tsunakazu Fujishiro, Midori Katoh, Mitsuyo Kohara, Yoshie Kishida, Chiharu Minami, Shinobu Nakayama, Naomi Nakazaki, Yoshimi Shimizu, Sayaka Shinpo, Chika Takahashi, Tsuyuko Wada, Manabu Yamada, Nobuko Ohmido, Makoto Hayashi, Kiichi Fukui, Tomoya Baba, Tomoko Nakamichi, Hirotada Mori, Satoshi Tabata, Genome Structure of the Legume, Lotus japonicus, DNA Research, Volume 15, Issue 4, August 2008, Pages 227–239, https://doi.org/10.1093/dnares/dsn008
Abstract	The legume Lotus japonicus has been widely used as a model system to investigate the genetic background of legume-specific phenomena such as symbiotic nitrogen fixation. Here, we report structural features of the L japonicus genome. The 315.1-Mb sequences determined in this and previous studies correspond to 67% of the genome (472 Mb), and are likely to cover 91.3% of the gene space. Linkage mapping anchored 130-Mb sequences onto the six linkage groups. A total of 10 951 complete and 19 848 partial structures of protein-encoding genes were assigned to the genome. Comparative analysis of these genes revealed the expansion of several functional domains and gene families that are characteristic of L japonicus. Synteny analysis detected traces of whole-genome duplication and the presence of synteny blocks with other plant genomes to various degrees. This study provides the first opportunity to look into the complex and unique genetic system of legumes.
Publisher	Oxford University Press
Source Title	DNA Research
Volume (Issue)	15(4)
Page	227-239
Date of Issued	2008-05-28
Language	English
Handle URL	https://hdl.handle.net/11094/79044
PISSN	13402838
eISSN	17561663
NCID	AA11095219
Relation.isIdenticalTo	DOI (Publisher Version) https://doi.org/10.1093/dnares/dsn008
Relation.isIdenticalTo	PMID 18511435
Access Rights	open access
CopyRight	© The Author 2008. Kazusa DNA Research Institute
oaire:version	Version of Record
Category	学術雑誌論文 Journal Article

Resource Type	journal article
Local Type	Journal Article
DCMI Type	Text
DCTERMS.bibliographicCitation	DNA Research. 2008, 15(4), p. 227-239
DC.title	Genome structure of the legume, Lotus japonicus
DC.creator	Sato, Shusei
	Nakamura, Yasukazu
	Kaneko, Takakazu
	Asamizu, Erika
	Kato, Tomohiko
	Nakao, Mitsuteru
	Sasamoto, Shigemi
	Watanabe, Akiko
	Ono, Akiko
	Kawashima, Kumiko
	Fujishiro, Tsunakazu
	Katoh, Midori
	Kohara, Mitsuyo
	Kishida, Yoshie
	Minami, Chiharu
	Nakayama, Shinobu
	Nakazaki, Naomi
	Shimizu, Yoshimi
	Shinpo, Sayaka
	Takahashi, Chika
	Wada, Tsuyuko
	Yamada, Manabu
	Ohmido, Nobuko
	Hayashi, Makoto
	Fukui, Kiichi
	Baba, Tomoya
	Nakamichi, Tomoko
	Mori, Hirotada
	Tabata, Satoshi
DC.publisher	Oxford University Press
DC.language' scheme='DCTERMS.RFC1766	English
DC.type' scheme='DCTERMS.DCMIType	Text
DCTERMS.issued' scheme='DCTERMS.W3CDTF	2008-05-28
DC.identifier	https://doi.org/10.1093/dnares/dsn008
DC.subject	Lotus japonicus
	Genome structure
	Fabaceae
	Comparative analysis
DC.description	Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Tomohiko Kato, Mitsuteru Nakao, Shigemi Sasamoto, Akiko Watanabe, Akiko Ono, Kumiko Kawashima, Tsunakazu Fujishiro, Midori Katoh, Mitsuyo Kohara, Yoshie Kishida, Chiharu Minami, Shinobu Nakayama, Naomi Nakazaki, Yoshimi Shimizu, Sayaka Shinpo, Chika Takahashi, Tsuyuko Wada, Manabu Yamada, Nobuko Ohmido, Makoto Hayashi, Kiichi Fukui, Tomoya Baba, Tomoko Nakamichi, Hirotada Mori, Satoshi Tabata, Genome Structure of the Legume, Lotus japonicus, DNA Research, Volume 15, Issue 4, August 2008, Pages 227–239, https://doi.org/10.1093/dnares/dsn008
DCTERMS.abstract	The legume Lotus japonicus has been widely used as a model system to investigate the genetic background of legume-specific phenomena such as symbiotic nitrogen fixation. Here, we report structural features of the L japonicus genome. The 315.1-Mb sequences determined in this and previous studies correspond to 67% of the genome (472 Mb), and are likely to cover 91.3% of the gene space. Linkage mapping anchored 130-Mb sequences onto the six linkage groups. A total of 10 951 complete and 19 848 partial structures of protein-encoding genes were assigned to the genome. Comparative analysis of these genes revealed the expansion of several functional domains and gene families that are characteristic of L japonicus. Synteny analysis detected traces of whole-genome duplication and the presence of synteny blocks with other plant genomes to various degrees. This study provides the first opportunity to look into the complex and unique genetic system of legumes.
DC.rights	© The Author 2008. Kazusa DNA Research Institute
DC.format	79044
citation_title	Genome structure of the legume, Lotus japonicus
citation_author	Sato, Shusei
	Nakamura, Yasukazu
	Kaneko, Takakazu
	Asamizu, Erika
	Kato, Tomohiko
	Nakao, Mitsuteru
	Sasamoto, Shigemi
	Watanabe, Akiko
	Ono, Akiko
	Kawashima, Kumiko
	Fujishiro, Tsunakazu
	Katoh, Midori
	Kohara, Mitsuyo
	Kishida, Yoshie
	Minami, Chiharu
	Nakayama, Shinobu
	Nakazaki, Naomi
	Shimizu, Yoshimi
	Shinpo, Sayaka
	Takahashi, Chika
	Wada, Tsuyuko
	Yamada, Manabu
	Ohmido, Nobuko
	Hayashi, Makoto
	Fukui, Kiichi
	Baba, Tomoya
	Nakamichi, Tomoko
	Mori, Hirotada
	Tabata, Satoshi
citation_publisher	Oxford University Press
citation_language	English
citation_date	2008-05-28
citation_journal_title	DNA Research
citation_volume	15
citation_issue	4
citation_firstpage	227
citation_lastpage	239
citation_doi	https://doi.org/10.1093/dnares/dsn008
citation_pmid	18511435
citation_public_url	https://hdl.handle.net/11094/79044

Genome structure of the legume, Lotus japonicus

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